10/30/2026, 1:55:52 PM · PharmCAT 3.4.0 · Research record, not medical advice
- read 5 gene calls11.3s
- PharmCATstandardised 5 genes11.1s
- Rules0 coverage gaps
Calls each call quoted from the source, then standardised by PharmCAT
Sample Molecular Diagnostics, Bengaluru · NOT A REAL LAB · 24 Oct 2026 · open original photo
| Gene | As printed | Standardised | Phenotype term |
|---|---|---|---|
| CYP2C19 | “CYP2C19 rs4244285 G/A Heterozygous; CYP2C19 rs4986893 G/G Wild type; CYP2C19 rs12248560 C/C Wild type” | *1/*2 | Intermediate Metabolizer |
| DPYD | “DPYD rs75017182 C/C Wild type; DPYD rs1801265 A/A Wild type; DPYD rs3918290 C/C Wild type; DPYD rs55886062 A/A Wild type; DPYD rs67376798 T/T Wild type” | Reference/Reference | Normal Metabolizer · activity 2.0 |
| NUDT15 | “NUDT15 rs116855232 C/C Wild type” | *1/*1 | Normal Metabolizer |
| TPMT | “TPMT rs1142345 A/A Wild type; TPMT rs1800460 C/C Wild type” | *1/*1 | Normal Metabolizer |
| UGT1A1 | “UGT1A1 rs3064744 (TA)6/(TA)7 Heterozygous; UGT1A1 rs4148323 G/G Wild type” | *1/*28 | Intermediate Metabolizer |
Method as printed: Method: targeted genotyping by real-time PCR. Only the listed variants are assayed; variants outside this panel cannot be excluded. Genotypes are reported per rsID on the forward strand. Star-allele assignment is left to the treating clinician.
Coveragedeterministic rules · which India-relevant variants this panel named
Most common Indian decreased-function DPYD variant (~3.3%, PMID 40810747)
~25% in Indians; toxicity signal in South Indian cohorts (PMC11300675)
European tier-1 variant; rare in Indians (PMID 40810747)
Tier-1 no-function variant (PMID 39032821)
Tier-1 variant; near-absent in Indians (PMID 40810747)
Main NUDT15 risk allele, ~7-11% in Indians (PMID 29470173)
TA-repeat allele, common in South Asians
East Asian allele; reported at low frequency in India
Most common TPMT variant in South Asians
Common no-function allele in South Asians
Increased-function allele
A variant the panel did not name is left out of cohort statistics for that variant, rather than counted as absent. Reader notes: Only the listed variants are assayed; variants outside this panel cannot be excluded. Star-allele assignment is left to the treating clinician. Synthetic document generated for software benchmarking. Not a real patient or laboratory.
Exportde-identified · the same record in three formats
Curator review
A curator checks each call against the source document before the record counts in a cohort, and Muse Spark web search finds published Indian frequency data for each variant. Both are written to the audit log. Reviewing is the one action that needs a curator code, because it is a claim that a person checked the page.
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