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IndiPGx-Pop p096

Lab reportcohort · india-sim

10/30/2026, 1:55:47 PM · PharmCAT 3.4.0 · Research record, not medical advice

2
Genes standardised
2
Calls quoted
0
Coverage gaps
0
Identifiers removed
19.7s
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  1. Muse Sparkread 2 gene calls9.9s
  2. PharmCATstandardised 2 genes9.8s
  3. Rules0 coverage gaps

CallsMuse Spark each call quoted from the source, then standardised by PharmCAT

Synthetic Genomics Lab (Kochi) · 14 Oct 2026 · open original photo

Uploaded lab report photo
GeneAs printedStandardisedPhenotype term
CYP2C19“*17/*1 Rapid metabolizer”*17/*1Rapid Metabolizer
CYP2D6“*10/*1 Normal metabolizer (activity score 1.25)”*10/*1Normal Metabolizer · activity 1.25

Method as printed: Method: targeted genotyping by real-time PCR. Only the listed variants are assayed; variants outside this panel cannot be excluded.

Coveragedeterministic rules · which India-relevant variants this panel named

CYP2C19*2named on the report

Common no-function allele in South Asians

CYP2C19*17named on the report

Increased-function allele

A variant the panel did not name is left out of cohort statistics for that variant, rather than counted as absent. Reader notes: Only the listed variants are assayed; variants outside this panel cannot be excluded. Synthetic document generated for software benchmarking. Not a real patient or laboratory.

Exportde-identified · the same record in three formats

Curator review

A curator checks each call against the source document before the record counts in a cohort, and Muse Spark web search finds published Indian frequency data for each variant. Both are written to the audit log. Reviewing is the one action that needs a curator code, because it is a claim that a person checked the page.

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Research tool, not medical advice. Pathya reads and standardises pharmacogenomic results; it makes no dose, drug or test recommendation. Audit log: data/cases/8959b4980294/audit.log.