10/30/2026, 6:25:53 AM · PharmCAT 3.4.0 · Research record, not medical advice
- read 3 gene calls14.9s
- PharmCATstandardised 3 genes13.8s
- Rules0 coverage gaps
Calls each call quoted from the source, then standardised by PharmCAT
Synthetic Genomics Lab (Kochi) · 13 Oct 2026 · open original photo
| Gene | As printed | Standardised | Phenotype term |
|---|---|---|---|
| CYP2C19 | “*1/*1 / Normal metabolizer” | *1/*1 | Normal Metabolizer |
| DPYD | “c.1905+1G>A (*2A) heterozygous / Intermediate metabolizer (activity score 1)” | Reference/c.1905+1G>A (*2A) | Intermediate Metabolizer · activity 1.0 |
| TPMT | “*3A/*3C (*3B + *3C in cis) / Poor metabolizer” | *3A/*3C | Poor Metabolizer |
Method as printed: Method: targeted genotyping by real-time PCR. Only the listed variants are assayed; variants outside this panel cannot be excluded.
Coveragedeterministic rules · which India-relevant variants this panel named
Most common Indian decreased-function DPYD variant (~3.3%, PMID 40810747)
~25% in Indians; toxicity signal in South Indian cohorts (PMC11300675)
European tier-1 variant; rare in Indians (PMID 40810747)
Tier-1 no-function variant (PMID 39032821)
Tier-1 variant; near-absent in Indians (PMID 40810747)
Most common TPMT variant in South Asians
Common no-function allele in South Asians
Increased-function allele
A variant the panel did not name is left out of cohort statistics for that variant, rather than counted as absent. A patient or lab reference printed on the report was removed before storage. Reader notes: Only the listed variants are assayed; variants outside this panel cannot be excluded. CYP2C19 *1/*1 reflects only *2, *3, *17 tested; untested variants cannot be excluded.
Exportde-identified · the same record in three formats
Curator review
This is a read-only sample. In the pilot, a curator checks each call against the source document before the record counts in a cohort, and Muse Spark web search finds published Indian frequency data for each variant. Both are written to the audit log.
Sign in with the pilot code